HL_1Y69_028

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1Y69|1|0|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5396

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1Y69|1|0|C|1075
1Y69|1|0|U|1076
1Y69|1|0|U|1077
1Y69|1|0|A|1078
1Y69|1|0|G|1079
1Y69|1|0|A|1080
1Y69|1|0|A|1081
1Y69|1|0|G|1082
1Y69|1|0|C|1083
1Y69|1|0|A|1084
1Y69|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16