HL_1Y69_036

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GCUAUGGCUAUGC

Length

13 nucleotides

Bulged bases

1Y69|1|0|A|1468, 1Y69|1|0|U|1469, 1Y69|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_036 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3465

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

1Y69|1|0|G|1465
1Y69|1|0|C|1466
1Y69|1|0|U|1467
1Y69|1|0|A|1468
1Y69|1|0|U|1469
1Y69|1|0|G|1470
1Y69|1|0|G|1471
1Y69|1|0|C|1472
1Y69|1|0|U|1473
1Y69|1|0|A|1474
1Y69|1|0|U|1475
1Y69|1|0|G|1476
1Y69|1|0|C|1477

Current chains

Chain 0

23S ribosomal RNA

Nearby chains