HL_1Y69_037

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GAAAAUC

Length

7 nucleotides

Bulged bases

1Y69|1|0|U|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_037 not in the Motif Atlas

Geometric match to HL_4WF9_033

Geometric discrepancy: 0.387

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1Y69|1|0|G|1508
1Y69|1|0|A|1509
1Y69|1|0|A|1510
1Y69|1|0|A|1511
1Y69|1|0|A|1512
1Y69|1|0|U|1513
1Y69|1|0|C|1514

Current chains

Chain 0

23S ribosomal RNA

Nearby chains