HL_1Y69_042

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1Y69|1|0|C|1711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_042 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.2971

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

1Y69|1|0|C|1708
1Y69|1|0|U|1709
1Y69|1|0|U|1710
1Y69|1|0|C|1711
1Y69|1|0|G|1712
1Y69|1|0|G|1713

Current chains

Chain 0

23S ribosomal RNA

Nearby chains