HL_1Y69_047

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_047 not in the Motif Atlas

Geometric match to HL_4WF9_053

Geometric discrepancy: 0.328

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1Y69|1|0|G|1855
1Y69|1|0|U|1856
1Y69|1|0|G|1857
1Y69|1|0|C|1858
1Y69|1|0|A|1859
1Y69|1|0|A|1860
1Y69|1|0|G|1861
1Y69|1|0|C|1862

Current chains

Chain 0

23S ribosomal RNA

Nearby chains