HL_1Y69_049

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

1Y69|1|0|U|1938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_049 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1937

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

1Y69|1|0|G|1932
1Y69|1|0|G|1933
1Y69|1|0|U|1934
1Y69|1|0|A|1935
1Y69|1|0|A|1936
1Y69|1|0|G|1937
1Y69|1|0|U|1938
1Y69|1|0|U|1939
1Y69|1|0|C|1940

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 8

Ribosome-recycling factor