HL_1Y69_050

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1Y69|1|0|A|2013, 1Y69|1|0|A|2014, 1Y69|1|0|G|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_050 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.1894

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

1Y69|1|0|G|2010
1Y69|1|0|U|2011
1Y69|1|0|A|2012
1Y69|1|0|A|2013
1Y69|1|0|A|2014
1Y69|1|0|G|2015
1Y69|1|0|A|2016
1Y69|1|0|U|2017
1Y69|1|0|G|2018
1Y69|1|0|C|2019

Current chains

Chain 0

23S ribosomal RNA

Nearby chains