HL_1Y69_052

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1Y69|1|0|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1646

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1Y69|1|0|C|2227
1Y69|1|0|U|2228
1Y69|1|0|G|2229
1Y69|1|0|G|2230
1Y69|1|0|G|2231
1Y69|1|0|G|2232
1Y69|1|0|C|2233
1Y69|1|0|G|2234
1Y69|1|0|G|2235

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 8

Ribosome-recycling factor

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27