HL_1Y69_053

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1Y69|1|0|A|2247, 1Y69|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_053 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.4037

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1Y69|1|0|C|2243
1Y69|1|0|C|2244
1Y69|1|0|A|2245
1Y69|1|0|A|2246
1Y69|1|0|A|2247
1Y69|1|0|A|2248
1Y69|1|0|U|2249
1Y69|1|0|G|2250
1Y69|1|0|U|2251
1Y69|1|0|A|2252
1Y69|1|0|A|2253
1Y69|1|0|C|2254
1Y69|1|0|G|2255

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27