HL_1Y69_075

3D structure

PDB id

1Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

CGAUUACCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Y69_075 not in the Motif Atlas

Homologous match to HL_4WF9_067

Geometric discrepancy: 0.5917

The information below is about HL_4WF9_067

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_17803.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1Y69|1|0|C|58
1Y69|1|0|G|59
1Y69|1|0|A|60
1Y69|1|0|U|61
1Y69|1|0|U|62
1Y69|1|0|A|63
1Y69|1|0|C|64
1Y69|1|0|C|65
1Y69|1|0|U|66
1Y69|1|0|G|67

Current chains

Chain 0

23S ribosomal RNA

Nearby chains