HL_1YFG_001

3D structure

PDB id

1YFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

YEAST INITIATOR TRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG(H2U)GGAAG

Length

9 nucleotides

Bulged bases

1YFG|1|A|G|18

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YFG_001 not in the Motif Atlas

Homologous match to HL_7UQ6_001

Geometric discrepancy: 0.1283

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1YFG|1|A|C|13
1YFG|1|A|A|14
1YFG|1|A|G|15
1YFG|1|A|H2U|16
1YFG|1|A|G|18
1YFG|1|A|G|19
1YFG|1|A|A|20
1YFG|1|A|A|21
1YFG|1|A|G|22

Current chains

Chain A

YEAST INITIATOR TRNA

Nearby chains