HL_1YG3_011

3D structure

PDB id

1YG3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

G(CH)GCCGAC

Length

8 nucleotides

Bulged bases

1YG3|11|A|A|13

QA status

Modified nucleotides: CH

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YG3_011 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2031

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

1YG3|11|A|G|7
1YG3|11|A|CH|8
1YG3|11|A|G|9
1YG3|11|A|C|10
1YG3|11|A|C|11
1YG3|11|A|G|12
1YG3|11|A|A|13
1YG3|11|A|C|14

Current chains

Chain A

ScYLV RNA pseudoknot

Nearby chains