HL_1YI2_033

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YI2_033 not in the Motif Atlas

Geometric match to HL_4V9F_033

Geometric discrepancy: 0.029

The information below is about HL_4V9F_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1YI2|1|0|C|1326
1YI2|1|0|G|1327
1YI2|1|0|A|1328
1YI2|1|0|G|1329
1YI2|1|0|A|1330
1YI2|1|0|G|1331

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32E