HL_1YIT_009

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_009 not in the Motif Atlas

Geometric match to HL_4V9F_009

Geometric discrepancy: 0.0851

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1YIT|1|0|C|252
1YIT|1|0|U|253
1YIT|1|0|C|254
1YIT|1|0|A|255
1YIT|1|0|C|256
1YIT|1|0|G|257

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L15E