HL_1YIT_035

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUGAUC

Length

7 nucleotides

Bulged bases

1YIT|1|0|C|1431, 1YIT|1|0|U|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_035 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.0327

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

1YIT|1|0|G|1430
1YIT|1|0|C|1431
1YIT|1|0|U|1432
1YIT|1|0|G|1433
1YIT|1|0|A|1434
1YIT|1|0|U|1435
1YIT|1|0|C|1436

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L39E

Chain P

50S RIBOSOMAL PROTEIN L19E

Chain R

50S RIBOSOMAL PROTEIN L22P