HL_1YIT_051

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUCAGUAG

Length

9 nucleotides

Bulged bases

1YIT|1|0|U|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_051 not in the Motif Atlas

Geometric match to HL_4V9F_051

Geometric discrepancy: 0.0371

The information below is about HL_4V9F_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1YIT|1|0|C|1990
1YIT|1|0|A|1991
1YIT|1|0|U|1992
1YIT|1|0|C|1993
1YIT|1|0|A|1994
1YIT|1|0|G|1995
1YIT|1|0|U|1996
1YIT|1|0|A|1997
1YIT|1|0|G|1998

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L14P