HL_1YIT_061

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1YIT|1|0|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YIT_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.0352

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1YIT|1|0|G|2442
1YIT|1|0|C|2443
1YIT|1|0|U|2444
1YIT|1|0|U|2445
1YIT|1|0|G|2446
1YIT|1|0|A|2447
1YIT|1|0|U|2448
1YIT|1|0|G|2449
1YIT|1|0|C|2450

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S RIBOSOMAL PROTEIN L44E

Chain L

50S RIBOSOMAL PROTEIN L15P

Chain M

50S RIBOSOMAL PROTEIN L15E