HL_1YMO_013

3D structure

PDB id

1YMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the P2b-P3 pseudoknot from human telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCAGCCCCAAACAAAA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YMO_013 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3686

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

1YMO|13|A|U|23
1YMO|13|A|C|24
1YMO|13|A|A|25
1YMO|13|A|G|26
1YMO|13|A|C|27
1YMO|13|A|C|28
1YMO|13|A|C|29
1YMO|13|A|C|30
1YMO|13|A|A|31
1YMO|13|A|A|32
1YMO|13|A|A|33
1YMO|13|A|C|34
1YMO|13|A|A|35
1YMO|13|A|A|36
1YMO|13|A|A|37
1YMO|13|A|A|38

Current chains

Chain A

Telomerase RNA P2b-P3 pseudoknot

Nearby chains