HL_1YN1_008

3D structure

PDB id

1YN1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUGACUA

Length

7 nucleotides

Bulged bases

1YN1|8|A|U|700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YN1_008 not in the Motif Atlas

Geometric match to HL_4V9F_036

Geometric discrepancy: 0.2381

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1YN1|8|A|U|695
1YN1|8|A|U|696
1YN1|8|A|G|697
1YN1|8|A|A|698
1YN1|8|A|C|699
1YN1|8|A|U|700
1YN1|8|A|A|701

Current chains

Chain A

VS RIBOZYME STEM-LOOP V

Nearby chains