HL_1YN1_012

3D structure

PDB id

1YN1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the VS ribozyme stem-loop V in the presence of MgCl2

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUUGACUAC

Length

9 nucleotides

Bulged bases

1YN1|11|A|U|700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1YN1_012 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3554

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1YN1|11|A|G|694
1YN1|11|A|U|695
1YN1|11|A|U|696
1YN1|11|A|G|697
1YN1|11|A|A|698
1YN1|11|A|C|699
1YN1|11|A|U|700
1YN1|11|A|A|701
1YN1|11|A|C|702

Current chains

Chain A

VS RIBOZYME STEM-LOOP V

Nearby chains