3D structure

PDB id
1ZBH (explore in PDB, NAKB, or RNA 3D Hub)
Description
3'-end specific recognition of histone mRNA stem-loop by 3'-exonuclease
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUUUCA
Length
6 nucleotides
Bulged bases
1ZBH|1|F|U|12, 1ZBH|1|F|U|13, 1ZBH|1|F|C|15
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_56334.1
Basepair signature
cWW-F
Number of instances in this motif group
16

Unit IDs

1ZBH|1|F|U|11
1ZBH|1|F|U|12
1ZBH|1|F|U|13
1ZBH|1|F|U|14
1ZBH|1|F|C|15
1ZBH|1|F|A|16

Current chains

Chain F
5'-R(*CP*CP*GP*GP*CP*UP*CP*UP*UP*UP*UP*CP*AP*GP*AP*GP*CP*CP*GP*G)-3'

Nearby chains

Chain A
3'-5' exonuclease ERI1
Chain C
3'-5' exonuclease ERI1
Chain D
3'-5' exonuclease ERI1

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.0466 s