HL_1ZHO_003

3D structure

PDB id

1ZHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a ribosomal protein L1 in complex with mRNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1ZHO|1|F|U|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ZHO_003 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1396

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

1ZHO|1|F|C|15
1ZHO|1|F|U|16
1ZHO|1|F|U|17
1ZHO|1|F|C|18
1ZHO|1|F|G|19
1ZHO|1|F|G|20

Current chains

Chain F

mRNA

Nearby chains

Chain E

50S ribosomal protein L1

Chain G

50S ribosomal protein L1