HL_1ZIG_002

3D structure

PDB id

1ZIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GAGA RNA TETRALOOP, NMR, 10 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ZIG_002 not in the Motif Atlas

Geometric match to HL_7RQB_063

Geometric discrepancy: 0.1583

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1ZIG|2|A|C|4
1ZIG|2|A|G|5
1ZIG|2|A|A|6
1ZIG|2|A|G|7
1ZIG|2|A|A|8
1ZIG|2|A|G|9

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*CP*GP*AP*GP*AP*GP*CP*CP*U)-3')

Nearby chains