HL_1ZO1_001

3D structure

PDB id

1ZO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

IF2, IF1, and tRNA fitted to cryo-EM data OF E. COLI 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

13.8 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

1ZO1|1|F|U|16, 1ZO1|1|F|U|17, 1ZO1|1|F|G|18, 1ZO1|1|F|G|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1ZO1_001 not in the Motif Atlas

Homologous match to HL_7UQ6_001

Geometric discrepancy: 0.1722

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1ZO1|1|F|C|13
1ZO1|1|F|A|14
1ZO1|1|F|G|15
1ZO1|1|F|U|16
1ZO1|1|F|U|17
1ZO1|1|F|G|18
1ZO1|1|F|G|19
1ZO1|1|F|G|20
1ZO1|1|F|A|21
1ZO1|1|F|G|22

Current chains

Chain F

P/I-site tRNA

Nearby chains