HL_22EU_002

3D structure

PDB id

22EU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Retron Ec78 complex (trans)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGAUUAG

Length

7 nucleotides

Bulged bases

22EU|1|N|A|13, 22EU|1|N|U|15

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22EU_002 not in the Motif Atlas

Geometric match to HL_9E6Q_019

Geometric discrepancy: 0.2678

The information below is about HL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25795.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

22EU|1|N|U|11
22EU|1|N|G|12
22EU|1|N|A|13
22EU|1|N|U|14
22EU|1|N|U|15
22EU|1|N|A|16
22EU|1|N|G|17

Current chains

Chain N

RNA (66-MER)

Nearby chains

Chain A

Retron

Chain B

PtuA