HL_22TU_003
3D structure
- PDB id
- 22TU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome in complex with DHX29
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_22TU_003 not in the Motif Atlas
- Homologous match to HL_9SFQ_004
- Geometric discrepancy: 0.1198
- The information below is about HL_9SFQ_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.5
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 138
Unit IDs
22TU|1|B4|G|52
22TU|1|B4|U|53
22TU|1|B4|U|54
22TU|1|B4|C|55
22TU|1|B4|A|56
22TU|1|B4|A|57
22TU|1|B4|A|58
22TU|1|B4|U|59
22TU|1|B4|C|60
Current chains
- Chain B4
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- 60S ribosomal protein L11
- Chain Lo
- 60S ribosomal protein L36a
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