HL_22TU_004

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAGGGGUAUG

Length

10 nucleotides

Bulged bases

22TU|1|C4|G|16, 22TU|1|C4|G|17, 22TU|1|C4|G|18, 22TU|1|C4|U|19, 22TU|1|C4|A|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22TU_004 not in the Motif Atlas

Geometric match to HL_7MRL_001

Geometric discrepancy: 0.2338

The information below is about HL_7MRL_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

22TU|1|C4|U|13
22TU|1|C4|A|14
22TU|1|C4|G|15
22TU|1|C4|G|16
22TU|1|C4|G|17
22TU|1|C4|G|18
22TU|1|C4|U|19
22TU|1|C4|A|20
22TU|1|C4|U|21
22TU|1|C4|G|22

Current chains

Chain C4

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA