HL_22TU_086

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

22TU|1|S2|C|324, 22TU|1|S2|C|325, 22TU|1|S2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_22TU_086 not in the Motif Atlas

Geometric match to HL_5WTI_001

Geometric discrepancy: 0.3407

The information below is about HL_5WTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

22TU|1|S2|C|322
22TU|1|S2|C|323
22TU|1|S2|C|324
22TU|1|S2|C|325
22TU|1|S2|C|326
22TU|1|S2|G|327
22TU|1|S2|U|328
22TU|1|S2|G|329

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6