HL_23VU_001

3D structure

PDB id

23VU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the TS-cleaving state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CUGCGAAGUG

Length

10 nucleotides

Bulged bases

23VU|1|B|U|-23

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23VU_001 not in the Motif Atlas

Geometric match to HL_4QLM_002

Geometric discrepancy: 0.1483

The information below is about HL_4QLM_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

23VU|1|B|C|-24
23VU|1|B|U|-23
23VU|1|B|G|-22
23VU|1|B|C|-21
23VU|1|B|G|-20
23VU|1|B|A|-19
23VU|1|B|A|-18
23VU|1|B|G|-17
23VU|1|B|U|-16
23VU|1|B|G|-15

Current chains

Chain B

RNA (56-MER)

Nearby chains

Chain A

UnCas12m4a