HL_23VW_001

3D structure

PDB id

23VW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TfCas12m3-crRNA-tgDNA ternary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

UAGCUCAGA

Length

9 nucleotides

Bulged bases

23VW|1|B|A|-24

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_23VW_001 not in the Motif Atlas

Geometric match to HL_4V9F_014

Geometric discrepancy: 0.179

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

33

Unit IDs

23VW|1|B|U|-25
23VW|1|B|A|-24
23VW|1|B|G|-23
23VW|1|B|C|-22
23VW|1|B|U|-21
23VW|1|B|C|-20
23VW|1|B|A|-19
23VW|1|B|G|-18
23VW|1|B|A|-17

Current chains

Chain B

RNA (59-MER)

Nearby chains

Chain A

CRISPR-associated DNA-binding protein Cas12m