HL_28SP_006

3D structure

PDB id

28SP (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28SP_006 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.2556

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

28SP|6|A|C|12
28SP|6|A|G|13
28SP|6|A|G|14
28SP|6|A|A|15
28SP|6|A|A|16
28SP|6|A|G|17

Current chains

Chain A

CONSERVED MOTIF IN SRP RNA

Nearby chains