HL_28UH_008

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

28UH|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UH_008 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1348

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

28UH|1|A|C|342
28UH|1|A|U|343
28UH|1|A|A|344
28UH|1|A|C|345
28UH|1|A|G|346
28UH|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL14

Chain o

Large ribosomal subunit protein bL19