HL_28UH_021

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

28UH|1|A|U|1030

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UH_021 not in the Motif Atlas

Geometric match to HL_1I6U_001

Geometric discrepancy: 0.2821

The information below is about HL_1I6U_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

28UH|1|A|C|1028
28UH|1|A|U|1029
28UH|1|A|U|1030
28UH|1|A|C|1031
28UH|1|A|G|1032
28UH|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains