HL_28UH_031
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- CCUUAC(6MZ)AG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UH_031 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.1311
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
28UH|1|Y|C|31
28UH|1|Y|C|32
28UH|1|Y|U|33
28UH|1|Y|U|34
28UH|1|Y|A|35
28UH|1|Y|C|36
28UH|1|Y|6MZ|37
28UH|1|Y|A|38
28UH|1|Y|G|39
Current chains
- Chain Y
- A/P-site Val-tRNA^Val
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: