HL_28UH_033

3D structure

PDB id

28UH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UH_033 not in the Motif Atlas

Homologous match to HL_9MTS_102

Geometric discrepancy: 0.1099

The information below is about HL_9MTS_102

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

44

Unit IDs

28UH|1|Z|G|31
28UH|1|Z|OMC|32
28UH|1|Z|U|33
28UH|1|Z|C|34
28UH|1|Z|A|35
28UH|1|Z|U|36
28UH|1|Z|A|37
28UH|1|Z|A|38
28UH|1|Z|C|39

Current chains

Chain Z

P/E-site tRNA^fMet

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain I

Small ribosomal subunit protein uS9

Chain X

mRNA