HL_28UH_085
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- GUCGGACAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UH_085 not in the Motif Atlas
- Geometric match to HL_8B0X_101
- Geometric discrepancy: 0.074
- The information below is about HL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02452.3
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
28UH|1|a|G|2304
28UH|1|a|U|2305
28UH|1|a|C|2306
28UH|1|a|G|2307
28UH|1|a|G|2308
28UH|1|a|A|2309
28UH|1|a|C|2310
28UH|1|a|A|2311
28UH|1|a|U|2312
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: