HL_28UI_068

3D structure

PDB id

28UI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

28UI|1|a|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UI_068 not in the Motif Atlas

Geometric match to HL_6CK5_001

Geometric discrepancy: 0.1912

The information below is about HL_6CK5_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

28UI|1|a|C|1533
28UI|1|a|U|1534
28UI|1|a|A|1535
28UI|1|a|C|1536
28UI|1|a|G|1537
28UI|1|a|G|1538

Current chains

Chain a

23S rRNA

Nearby chains