HL_28UJ_072

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

28UJ|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_072 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.0292

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

28UJ|1|a|A|1630
28UJ|1|a|G|1631
28UJ|1|a|A|1632
28UJ|1|a|G|1633
28UJ|1|a|A|1634
28UJ|1|a|A|1635
28UJ|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains