HL_28UJ_074

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

28UJ|1|a|U|1729, 28UJ|1|a|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_074 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.2679

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_58375.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

28UJ|1|a|C|1727
28UJ|1|a|C|1728
28UJ|1|a|U|1729
28UJ|1|a|C|1730
28UJ|1|a|G|1731
28UJ|1|a|C|1732
28UJ|1|a|G|1733

Current chains

Chain a

23S rRNA

Nearby chains