HL_28UJ_076

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

28UJ|1|a|A|1780, 28UJ|1|a|U|1781, 28UJ|1|a|U|1782, 28UJ|1|a|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_076 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.0262

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.3

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

28UJ|1|a|U|1777
28UJ|1|a|U|1778
28UJ|1|a|U|1779
28UJ|1|a|A|1780
28UJ|1|a|U|1781
28UJ|1|a|U|1782
28UJ|1|a|A|1783
28UJ|1|a|A|1784
28UJ|1|a|A|1785
28UJ|1|a|A|1786
28UJ|1|a|A|1787

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2