HL_28UJ_098

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

28UJ|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UJ_098 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.2304

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

28UJ|1|a|G|2819
28UJ|1|a|A|2820
28UJ|1|a|A|2821
28UJ|1|a|G|2822
28UJ|1|a|A|2823
28UJ|1|a|C|2824
28UJ|1|a|G|2825
28UJ|1|a|A|2826
28UJ|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17

Chain z

Large ribosomal subunit protein bL32