HL_28UL_011

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

28UL|1|A|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_011 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.1856

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

28UL|1|A|G|462
28UL|1|A|U|463
28UL|1|A|U|464
28UL|1|A|A|465
28UL|1|A|A|466
28UL|1|A|U|467
28UL|1|A|A|468
28UL|1|A|C|469
28UL|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains