HL_28UL_029

3D structure

PDB id

28UL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

28UL|1|A|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UL_029 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.0774

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

28UL|1|A|C|1449
28UL|1|A|U|1450
28UL|1|A|U|1451
28UL|1|A|C|1452
28UL|1|A|G|1453
28UL|1|A|G|1454

Current chains

Chain A

16S rRNA

Nearby chains