HL_28UM_034

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

28UM|1|a|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UM_034 not in the Motif Atlas

Geometric match to HL_8B0X_033

Geometric discrepancy: 0.0822

The information below is about HL_8B0X_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.5

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

28UM|1|a|U|59
28UM|1|a|G|60
28UM|1|a|C|61
28UM|1|a|U|62
28UM|1|a|A|63
28UM|1|a|A|64
28UM|1|a|U|65
28UM|1|a|C|66
28UM|1|a|U|67
28UM|1|a|G|68

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23

Chain x

Large ribosomal subunit protein uL29