HL_28UM_068

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

28UM|1|a|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28UM_068 not in the Motif Atlas

Geometric match to HL_7OAX_001

Geometric discrepancy: 0.1737

The information below is about HL_7OAX_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.6

Basepair signature

cWW-tSW-F

Number of instances in this motif group

67

Unit IDs

28UM|1|a|C|1533
28UM|1|a|U|1534
28UM|1|a|A|1535
28UM|1|a|C|1536
28UM|1|a|G|1537
28UM|1|a|G|1538

Current chains

Chain a

23S rRNA

Nearby chains