HL_28UN_032
3D structure
- PDB id
- 28UN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_28UN_032 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.0729
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
28UN|1|Y|G|53
28UN|1|Y|5MU|54
28UN|1|Y|PSU|55
28UN|1|Y|C|56
28UN|1|Y|G|57
28UN|1|Y|A|58
28UN|1|Y|U|59
28UN|1|Y|C|60
28UN|1|Y|C|61
Current chains
- Chain Y
- A/P-site Val-tRNA^Val
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: