HL_28ZV_019

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

28ZV|1|S2|G|836, 28ZV|1|S2|G|838, 28ZV|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|C|833
28ZV|1|S2|C|834
28ZV|1|S2|C|835
28ZV|1|S2|G|836
28ZV|1|S2|A|837
28ZV|1|S2|G|838
28ZV|1|S2|C|839
28ZV|1|S2|C|840
28ZV|1|S2|G|841

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24