HL_28ZV_025

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZV_025 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.0713

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28ZV|1|S2|G|1141
28ZV|1|S2|G|1142
28ZV|1|S2|A|1143
28ZV|1|S2|A|1144
28ZV|1|S2|A|1145
28ZV|1|S2|C|1146

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26