HL_28ZV_033

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_28ZV_033 not in the Motif Atlas

Homologous match to HL_9H3G_105

Geometric discrepancy: 0.23

The information below is about HL_9H3G_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

28ZV|1|S2|C|1565
28ZV|1|S2|G|1566
28ZV|1|S2|G|1567
28ZV|1|S2|C|1568
28ZV|1|S2|A|1569
28ZV|1|S2|G|1570

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

Small ribosomal subunit protein eS19