HL_28ZV_036

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGGUCGGCCCACGGCC

Length

17 nucleotides

Bulged bases

28ZV|1|S2|G|1758, 28ZV|1|S2|U|1761, 28ZV|1|S2|C|1762, 28ZV|1|S2|G|1763, 28ZV|1|S2|G|1764, 28ZV|1|S2|C|1765, 28ZV|1|S2|C|1766, 28ZV|1|S2|C|1767, 28ZV|1|S2|A|1768, 28ZV|1|S2|C|1769, 28ZV|1|S2|G|1770, 28ZV|1|S2|G|1771, 28ZV|1|S2|C|1772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|G|1757
28ZV|1|S2|G|1758
28ZV|1|S2|G|1759
28ZV|1|S2|G|1760
28ZV|1|S2|U|1761
28ZV|1|S2|C|1762
28ZV|1|S2|G|1763
28ZV|1|S2|G|1764
28ZV|1|S2|C|1765
28ZV|1|S2|C|1766
28ZV|1|S2|C|1767
28ZV|1|S2|A|1768
28ZV|1|S2|C|1769
28ZV|1|S2|G|1770
28ZV|1|S2|G|1771
28ZV|1|S2|C|1772
28ZV|1|S2|C|1773

Current chains

Chain S2

18S ribosomal RNA

Nearby chains